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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32374675_32374863_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32374675 - 32374863
Intron Length:
189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATTAT
U12 Branch Point Sequence:
CTTTGCTGATTA
Flanking Amino Acid:
AYSSAVSSKMVRQILELCPN
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
0.9
75.8
33.3
Major BPS
69.6
0.49
1.2
60.1
46.3
Major PPT
87.7
0.85
0.7
80.1
31.9
Minor 5ss
42.3
-0.9
2.5
50.7
40.4
Minor BPS
47.6
-0.1
2.1
63.69
43.2

Associated Gene:

Gene:
FBXL5
Ensembl Gene ID:
ENSAPLG00000005791
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021644
32361806 - 32397326
35521
ENSAPLT00000042469
32362381 - 32386436
24056
ENSAPLT00000006031
32361806 - 32393593
31788
ENSAPLT00000038894
32344985 - 32386262
41278
ENSAPLT00000032248
32362381 - 32389712
27332
ENSAPLT00000025263
32367751 - 32393593
25843