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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32381043_32382426_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32381043 - 32382426
Intron Length:
1384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGTAGAT
U12 Branch Point Sequence:
TGTGTCAGCACT
Flanking Amino Acid:
FLPHMKEEEEVFQPMLMEYF
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.4
39.6
Major BPS
48.5
-0
1.4
46.4
47
Major PPT
86
0.81
0.7
85.6
29.2
Minor 5ss
35
-1.7
2.9
45.9
42.2
Minor BPS
43.3
-0.4
2.2
66.08
44.3

Associated Gene:

Gene:
FBXL5
Ensembl Gene ID:
ENSAPLG00000005791
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021644
32361806 - 32397326
35521
ENSAPLT00000042469
32362381 - 32386436
24056
ENSAPLT00000006031
32361806 - 32393593
31788
ENSAPLT00000038894
32344985 - 32386262
41278
ENSAPLT00000032248
32362381 - 32389712
27332
ENSAPLT00000025263
32367751 - 32393593
25843