About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32384515_32386247_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32384515 - 32386247
Intron Length:
1733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTGTTGATT
Flanking Amino Acid:
MVSIELSKTNFSNNN
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
68.1
42.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.8
0.74
0.7
77.1
31.7
Minor 5ss
39
-1.2
2.8
49
46.8
Minor BPS
57.5
0.32
2.1
78.89
37.8

Associated Gene:

Gene:
FBXL5
Ensembl Gene ID:
ENSAPLG00000005791
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038894
32344985 - 32386262
41278