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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32384515_32389667_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32384515 - 32389667
Intron Length:
5153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATGCTT
5'SS Class:
major
3'SS Sequence:
TTCTTTCTCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTGTTGATT
Flanking Amino Acid:
NAGVKTCGCLLSKTNFSNNN
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
68
42.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.8
0.74
0.7
77.1
31.7
Minor 5ss
36.9
-1.5
3.5
53.5
44.7
Minor BPS
57.5
0.32
2.1
78.89
37.8

Associated Gene:

Gene:
FBXL5
Ensembl Gene ID:
ENSAPLG00000005791
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032248
32362381 - 32389712
27332