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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32401513_32405064_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32401513 - 32405064
Intron Length:
3552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TCAATGATTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATTTCAATGATT
Flanking Amino Acid:
DYIRIVNPAVGEKNCLELWE
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
69.8
0.45
1
62.3
42.8
Minor 5ss
41.5
-0.9
2.9
50
46.3
Minor BPS
55.9
0.27
1.9
79.83
35.6

Associated Gene:

Gene:
BST1
Ensembl Gene ID:
ENSAPLG00000022493
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045004
32400877 - 32416424
15548