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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32405195_32406417_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32405195 - 32406417
Intron Length:
1223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTCTTCTGCATT
Flanking Amino Acid:
LAFHTIPANKSLFWENNQLL
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
84.4
33
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
78.6
0.64
0.9
77.7
35.8
Minor 5ss
38.3
-1.3
3.4
57.5
46.8
Minor BPS
53.5
0.19
1.9
75.82
41.6

Associated Gene:

Gene:
BST1
Ensembl Gene ID:
ENSAPLG00000022493
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045004
32400877 - 32416424
15548