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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32407075_32407692_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32407075 - 32407692
Intron Length:
618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAATAGT
5'SS Class:
major
3'SS Sequence:
TTTTGTATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GAGTTCTGAAAA
Flanking Amino Acid:
DSFWRMASITYAQHSSGVIH
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.1
68.4
42.2
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
87
0.83
0.8
81.8
34.6
Minor 5ss
39.7
-1.2
3
60.8
43.7
Minor BPS
52.7
0.08
1.6
59.55
39.5

Associated Gene:

Gene:
BST1
Ensembl Gene ID:
ENSAPLG00000022493
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045004
32400877 - 32416424
15548