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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32407770_32410285_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32407770 - 32410285
Intron Length:
2516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTTTTTATCA
Flanking Amino Acid:
SAEGGAYPVKGFFADYEIPN
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
1
76.9
33.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
91.8
0.94
0.7
93.4
22.6
Minor 5ss
32.3
-2
2.9
32.2
42.1
Minor BPS
71.9
0.68
1.5
82.41
32.7

Associated Gene:

Gene:
BST1
Ensembl Gene ID:
ENSAPLG00000022493
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045004
32400877 - 32416424
15548