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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32410379_32411376_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32410379 - 32411376
Intron Length:
998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAA
U12 Branch Point Sequence:
CTTTTCTTACAG
Flanking Amino Acid:
WVVDDIQGPDRDSCGKNTVK
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
64.7
0.37
1
73
31.5
Major PPT
92.4
0.95
0.6
87.6
22.8
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
56.2
0.06
1.8
63.72
44.3

Associated Gene:

Gene:
BST1
Ensembl Gene ID:
ENSAPLG00000022493
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045004
32400877 - 32416424
15548