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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32443534_32444093_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32443534 - 32444093
Intron Length:
560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGACA
5'SS Class:
strong_major
3'SS Sequence:
CCTTATTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TGTACCTTATTT
Flanking Amino Acid:
LASHPIPCNKSLFWSKTNDL
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.3
39
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
80.7
0.69
0.8
75.1
33
Minor 5ss
31.2
-2.2
3.3
40.2
45.7
Minor BPS
66.9
0.61
1.6
81.7
39.8

Associated Gene:

Gene:
CD38
Ensembl Gene ID:
ENSAPLG00000006255
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006498
32431314 - 32451995
20682