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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32446793_32447486_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32446793 - 32447486
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTTACT
5'SS Class:
major
3'SS Sequence:
CCCATTCTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
ACTTAGCTAACT
Flanking Amino Acid:
SIEAGAFRSSSIFGSIEVFN
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
77.3
37.6
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
78.1
0.63
0.8
71.3
33
Minor 5ss
37
-1.5
3
52.4
44.2
Minor BPS
46.9
-0.1
2.4
72.12
44.4

Associated Gene:

Gene:
CD38
Ensembl Gene ID:
ENSAPLG00000006255
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006498
32431314 - 32451995
20682