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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32447580_32449882_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32447580 - 32449882
Intron Length:
2303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACCAC
5'SS Class:
major
3'SS Sequence:
CTTTTCTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAC
U12 Branch Point Sequence:
ACACAAGTAACA
Flanking Amino Acid:
WLMHDIGGPQSESCSGHSIQ
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
65.6
40.5
Major BPS
57.9
0.2
1.1
59.4
34.8
Major PPT
88.7
0.87
0.7
81.1
30.9
Minor 5ss
37.5
-1.4
3.2
50.1
46.5
Minor BPS
41
-0.6
2.2
50.63
39.9

Associated Gene:

Gene:
CD38
Ensembl Gene ID:
ENSAPLG00000006255
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006498
32431314 - 32451995
20682