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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32498908_32501659_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32498908 - 32501659
Intron Length:
2752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGACAC
5'SS Class:
major
3'SS Sequence:
TTTTTTTGTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTTTGTATA
Flanking Amino Acid:
YDDVETIPMKNSVEQW*
Intron Amino Acid Position:
838

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
68.8
36.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
86.6
0.82
0.8
84.2
30.9
Minor 5ss
34
-1.8
3.1
43.1
38
Minor BPS
53.5
0.1
1.7
71.08
35.7

Associated Gene:

Gene:
PROM1
Ensembl Gene ID:
ENSAPLG00000006442
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022868
32498867 - 32553140
54274