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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32501292_32501659_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32501292 - 32501659
Intron Length:
368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGACAC
5'SS Class:
major
3'SS Sequence:
TATTTTATTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTTATTA
Flanking Amino Acid:
YDDVETIPMKNTENGNNGYH
Intron Amino Acid Position:
838

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
68.8
36.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.8
0.83
0.8
81.3
34.7
Minor 5ss
34
-1.8
3.1
43.1
38
Minor BPS
59.1
0.28
1.6
71.05
35.7

Associated Gene:

Gene:
PROM1
Ensembl Gene ID:
ENSAPLG00000006442
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006705
32498867 - 32553140
54274