Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32501950_32502363_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

32501950 - 32502363

Intron Length:

414

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGA|GTAAGTATA

5'SS Class:

major

3'SS Sequence:

TTTTCAATTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

TTATTCCTAACC

Flanking Amino Acid:

RRMDTEDVYDDSSVSGTWHF

Intron Amino Acid Position:

839

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.2

0.69

80.8

33.6

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

84.5

0.78

0.8

78.8

33.2

Minor 5ss

40.6

-1.1

2.8

47.9

41.8

Minor BPS

69.6

0.59

1.6

79.88

34.5

Associated Gene:

Gene:

PROM1

Ensembl Gene ID:

ENSAPLG00000006442

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027947

32501660 - 32553140

51481