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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32504779_32505851_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32504779 - 32505851
Intron Length:
1073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATATTAAAC
Flanking Amino Acid:
LLKRTSSELMVKVKNVVSAV
Intron Amino Acid Position:
711

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
89.6
24.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.4
0.8
0.7
77.3
31.4
Minor 5ss
46.3
-0.4
2.8
64.1
41.5
Minor BPS
59.7
0.28
1.7
73.63
36.3

Associated Gene:

Gene:
PROM1
Ensembl Gene ID:
ENSAPLG00000006442
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027947
32501660 - 32553140
51481
ENSAPLT00000022868
32498867 - 32553140
54274
ENSAPLT00000034810
32497183 - 32553140
55958
ENSAPLT00000006705
32498867 - 32553140
54274
ENSAPLT00000030515
32497183 - 32553140
55958
ENSAPLT00000028437
32497183 - 32553140
55958