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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32512612_32513040_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32512612 - 32513040
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGTTA
5'SS Class:
major
3'SS Sequence:
TTTTGTCTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
CATTGCTGAATT
Flanking Amino Acid:
EPFEDKTLFKVLDTPYLLNQ
Intron Amino Acid Position:
520

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
0.9
74.2
32
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
80.5
0.69
0.8
73.8
36.9
Minor 5ss
34.2
-1.8
3.4
46.2
49.1
Minor BPS
56.3
0.28
1.9
73.86
43.2

Associated Gene:

Gene:
PROM1
Ensembl Gene ID:
ENSAPLG00000006442
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027947
32501660 - 32553140
51481
ENSAPLT00000022868
32498867 - 32553140
54274
ENSAPLT00000034810
32497183 - 32553140
55958
ENSAPLT00000006705
32498867 - 32553140
54274
ENSAPLT00000030515
32497183 - 32553140
55958
ENSAPLT00000028437
32497183 - 32553140
55958