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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32517186_32518412_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32517186 - 32518412
Intron Length:
1227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTTCAATT
Flanking Amino Acid:
KIDLSSLVQKGYAAFNDTPD
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
82.4
31.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.7
0.8
0.7
85.7
27.6
Minor 5ss
43.7
-0.7
3
61.2
43.7
Minor BPS
66.9
0.61
1.4
81.89
33.7

Associated Gene:

Gene:
PROM1
Ensembl Gene ID:
ENSAPLG00000006442
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027947
32501660 - 32553140
51481
ENSAPLT00000022868
32498867 - 32553140
54274
ENSAPLT00000034810
32497183 - 32553140
55958
ENSAPLT00000006705
32498867 - 32553140
54274
ENSAPLT00000030515
32497183 - 32553140
55958
ENSAPLT00000028437
32497183 - 32553140
55958