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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32518488_32518897_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32518488 - 32518897
Intron Length:
410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
ACTACTTTGATG
Flanking Amino Acid:
QLNINANFSGLPGVSSQLAK
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.3
34.5
Major BPS
84
0.85
0.9
75
39.9
Major PPT
83.2
0.75
0.8
77.1
37.1
Minor 5ss
29.3
-2.4
3.3
29.9
43.1
Minor BPS
56.7
0.06
1.4
56.77
39.4

Associated Gene:

Gene:
PROM1
Ensembl Gene ID:
ENSAPLG00000006442
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022868
32498867 - 32553140
54274
ENSAPLT00000034810
32497183 - 32553140
55958
ENSAPLT00000006705
32498867 - 32553140
54274
ENSAPLT00000030515
32497183 - 32553140
55958
ENSAPLT00000028437
32497183 - 32553140
55958
ENSAPLT00000027947
32501660 - 32553140
51481