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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32520552_32523251_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32520552 - 32523251
Intron Length:
2700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTCCATGACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTTTTTCATCT
Flanking Amino Acid:
TKDKALSDLNNVGPLLGSRV
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
79.9
32.8
Major BPS
100
1.24
0.5
100
0
Major PPT
62.9
0.29
1
56.4
37.6
Minor 5ss
40.2
-1.1
2.8
54.6
37.1
Minor BPS
55.2
0.24
1.8
76.37
40.5

Associated Gene:

Gene:
PROM1
Ensembl Gene ID:
ENSAPLG00000006442
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027947
32501660 - 32553140
51481
ENSAPLT00000022868
32498867 - 32553140
54274
ENSAPLT00000034810
32497183 - 32553140
55958
ENSAPLT00000021586
32519312 - 32552948
33637
ENSAPLT00000030515
32497183 - 32553140
55958
ENSAPLT00000006705
32498867 - 32553140
54274
ENSAPLT00000028437
32497183 - 32553140
55958