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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32523316_32537527_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32523316 - 32537527
Intron Length:
14212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTGT
5'SS Class:
strong_major
3'SS Sequence:
TATCTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
ATTACTTTAATA
Flanking Amino Acid:
FGNTQGDYQKQIDYLVSQYN
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
72.1
40.4
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
90
0.9
0.7
88.5
28.2
Minor 5ss
44.9
-0.5
3
65
46.2
Minor BPS
74.8
0.78
1.1
78.41
31.7

Associated Gene:

Gene:
PROM1
Ensembl Gene ID:
ENSAPLG00000006442
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021586
32519312 - 32552948
33637