About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32525858_32532177_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32525858 - 32532177
Intron Length:
6320

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
GTATTTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TATCTGTTAACT
Flanking Amino Acid:
TFLFVASLIISIGVLCAYAA
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.5
1.14
0.7
83.7
31
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
81.6
0.71
0.8
77.4
36.7
Minor 5ss
21.7
-3.3
3.8
31.8
42.6
Minor BPS
62.4
0.47
2.1
82.35
38.7

Associated Gene:

Gene:
PROM1
Ensembl Gene ID:
ENSAPLG00000006442
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028437
32497183 - 32553140
55958
ENSAPLT00000027947
32501660 - 32553140
51481
ENSAPLT00000022868
32498867 - 32553140
54274
ENSAPLT00000034810
32497183 - 32553140
55958
ENSAPLT00000006705
32498867 - 32553140
54274
ENSAPLT00000030515
32497183 - 32553140
55958