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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32532384_32533977_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32532384 - 32533977
Intron Length:
1594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTGT
5'SS Class:
major
3'SS Sequence:
GTCTGAATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGAAT
U12 Branch Point Sequence:
TTTGTCTGAATT
Flanking Amino Acid:
KPENVVLTLQAIYYEIGFIV
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
72.3
39.7
Major BPS
62
0.3
1.4
71.9
41
Major PPT
70.6
0.46
1
62.1
42.4
Minor 5ss
38.5
-1.3
3.4
56.5
47.6
Minor BPS
67.8
0.64
1.5
84.15
37

Associated Gene:

Gene:
PROM1
Ensembl Gene ID:
ENSAPLG00000006442
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034810
32497183 - 32553140
55958
ENSAPLT00000030515
32497183 - 32553140
55958
ENSAPLT00000027947
32501660 - 32553140
51481