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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32534005_32537527_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32534005 - 32537527
Intron Length:
3523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTGT
5'SS Class:
strong_major
3'SS Sequence:
TTGACTTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTGTTTTGACT
Flanking Amino Acid:
FGNTQGDYQKPENVVLTLQA
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
72.1
40.4
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
74.7
0.56
0.9
68.8
37.1
Minor 5ss
44.9
-0.5
3
65
46.2
Minor BPS
71.1
0.75
1.3
85.97
34.5

Associated Gene:

Gene:
PROM1
Ensembl Gene ID:
ENSAPLG00000006442
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030515
32497183 - 32553140
55958
ENSAPLT00000027947
32501660 - 32553140
51481
ENSAPLT00000034810
32497183 - 32553140
55958