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Intron Name: Anas_platyrhynchos_platyrhynchos_4_3253482_3253550_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3253482 - 3253550

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGCGG

5'SS Class:

strong_major

3'SS Sequence:

GCGGTGGCTGCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GGCTGAG

U12 Branch Point Sequence:

CGGGGCTGAGGC

Flanking Amino Acid:

SLGMTESQVKVWFQNRRTKW

Intron Amino Acid Position:

163

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

60.4

45.8

Major BPS

43.9

-0.3

1.6

36.8

44.4

Major PPT

0.2

1.1

49.9

43.9

Minor 5ss

24.7

-2.9

29.5

43.3

Minor BPS

34.2

-1.2

35.13

41.2

Associated Gene:

Gene:

NKX6-1

Ensembl Gene ID:

ENSAPLG00000029273

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026392

3253230 - 3255414

2185