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Intron Name: Anas_platyrhynchos_platyrhynchos_4_3253848_3253898_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3253848 - 3253898

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGCAGGGG

5'SS Class:

weak_major

3'SS Sequence:

TGCGCCCCGTGAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCTGGAG

U12 Branch Point Sequence:

CCTGGAGGGACG

Flanking Amino Acid:

GRTPIFWPGVYRTPTPTPTP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

55.7

0.14

1.1

39.7

Major BPS

39.2

-0.6

1.6

34.4

42.4

Major PPT

45.8

-0.2

1.7

50.8

39.3

Minor 5ss

21.6

-3.3

3.4

25.5

39.4

Minor BPS

29.8

-1.7

2.3

31.43

41.5

Associated Gene:

Gene:

NKX6-1

Ensembl Gene ID:

ENSAPLG00000029273

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026392

3253230 - 3255414

2185