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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32568388_32572351_R

Intron Information:

Intron Rank:
147529
Intron Class:
major
Intron Phase:
Intron Coordinates:
32568388 - 32572351
Intron Length:
3964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGGTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTGGTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78
31.9
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
81.2
0.7
0.9
75.8
38.1
Minor 5ss
32.5
-2
3.2
40.8
45.4
Minor BPS
44.1
-0.4
2.8
70.02
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026734
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033975
32568102 - 32574177
6076