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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32591402_32594954_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32591402 - 32594954
Intron Length:
3553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATGC
Flanking Amino Acid:
AYLCVVLFYCGLISLKVLNS
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.3
0.8
0.9
81.5
35.1
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
51.9
0.04
2
70.85
40.8

Associated Gene:

Gene:
TAPT1
Ensembl Gene ID:
ENSAPLG00000007389
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028580
32588192 - 32624840
36649
ENSAPLT00000007685
32588334 - 32624840
36507