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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32597809_32598861_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32597809 - 32598861
Intron Length:
1053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAGGTTAT
5'SS Class:
major
3'SS Sequence:
GGATTTTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
ATGTGCTGGATT
Flanking Amino Acid:
FLLSLQHKYEVYSEYRASLA
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
77.7
33.3
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
78.3
0.64
1
69.4
45.8
Minor 5ss
42.2
-0.9
3.2
57.4
41.7
Minor BPS
49.4
0.03
1.9
69.62
41.8

Associated Gene:

Gene:
TAPT1
Ensembl Gene ID:
ENSAPLG00000007389
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007685
32588334 - 32624840
36507