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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32598916_32599388_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
32598916 - 32599388
Intron Length:
473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAGGTATT
5'SS Class:
major
3'SS Sequence:
ATGCATGTTAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GGCTTTTGAATC
Flanking Amino Acid:
ITKFNDITADVESEIRSTFL
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
83.8
34.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
57.7
0.17
1.2
55.8
43
Minor 5ss
42.7
-0.8
3.2
64
40.7
Minor BPS
51.3
0.02
1.4
55.89
36.8

Associated Gene:

Gene:
TAPT1
Ensembl Gene ID:
ENSAPLG00000007389
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007685
32588334 - 32624840
36507