Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32606739_32612521_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

32606739 - 32612521

Intron Length:

5783

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTGGTTTT

5'SS Class:

major

3'SS Sequence:

CTTTGTATTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGTAT

U12 Branch Point Sequence:

CTTAGTGGAACT

Flanking Amino Acid:

GLRSHRGLTESDRRLLQPAQ

Intron Amino Acid Position:

195

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.9

0.64

1.2

79.9

Major BPS

71.5

0.53

1.4

71.7

44.6

Major PPT

84.2

0.77

0.8

81.4

34.9

Minor 5ss

41.1

-1

3.1

58.6

Minor BPS

42.4

-0.5

2.4

64.88

45.7

Associated Gene:

Gene:

TAPT1

Ensembl Gene ID:

ENSAPLG00000007389

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007685

32588334 - 32624840

36507