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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32606739_32617170_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32606739 - 32617170
Intron Length:
10432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
CTTAGTGGAACT
Flanking Amino Acid:
RFITLPCYGLRDRRLLQPAQ
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
75.4
37.3
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
84.2
0.77
0.8
81.4
34.9
Minor 5ss
40
-1.1
2.8
50
46.3
Minor BPS
42.4
-0.5
2.4
64.88
45.7

Associated Gene:

Gene:
TAPT1
Ensembl Gene ID:
ENSAPLG00000007389
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028580
32588192 - 32624840
36649