About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32612546_32617170_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32612546 - 32617170
Intron Length:
4625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTGAGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTGTTTATTT
Flanking Amino Acid:
RFITLPCYGLRSHRGLTESD
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
75.4
37.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
68.6
0.42
1.1
65.5
44.4
Minor 5ss
40
-1.1
2.8
50
46.3
Minor BPS
60.4
0.41
2
83.14
39

Associated Gene:

Gene:
TAPT1
Ensembl Gene ID:
ENSAPLG00000007389
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007685
32588334 - 32624840
36507