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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3264351_3270960_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3264351 - 3270960
Intron Length:
6610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGGTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTGTTGGTCATA
Flanking Amino Acid:
EKEKEEGSEQEADLIERLDD
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
66.5
39.1
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
70
0.45
1
64.7
41.4
Minor 5ss
24.1
-3
3.2
29.4
43.5
Minor BPS
39.4
-0.8
2.7
57.55
43.2

Associated Gene:

Gene:
CDS1
Ensembl Gene ID:
ENSAPLG00000003109
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033126
3264258 - 3290504
26247