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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32650790_32656998_R

Intron Information:

Intron Rank:
141261
Intron Class:
major
Intron Phase:
Intron Coordinates:
32650790 - 32656998
Intron Length:
6209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTTCTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
67.5
37.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
84.2
0.77
0.8
81.5
28.8
Minor 5ss
36.1
-1.6
2.8
44.9
43.1
Minor BPS
55.5
0.25
1.8
75.31
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023341
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034763
32646898 - 32658147
11250