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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32657135_32658024_R

Intron Information:

Intron Rank:
141262
Intron Class:
major
Intron Phase:
Intron Coordinates:
32657135 - 32658024
Intron Length:
890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTGATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CCTTCCTGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
1
92
25
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
71.3
0.48
0.9
69.8
35.6
Minor 5ss
38
-1.4
2.8
51.9
44.6
Minor BPS
56.5
0.28
1.8
72.32
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023341
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034763
32646898 - 32658147
11250