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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32689743_32692473_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
32689743 - 32692473
Intron Length:
2731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTGGT
5'SS Class:
major
3'SS Sequence:
GTGCTGTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTCCATATAACA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.2
68.2
42.9
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
71
0.47
1
64
41.6
Minor 5ss
29.4
-2.4
3.3
41.3
45.1
Minor BPS
51
0.03
1.8
66.79
39.3

Associated Gene:

Gene:
LDB2
Ensembl Gene ID:
ENSAPLG00000007630
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023838
32689411 - 33061505
372095