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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32689743_32698846_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32689743 - 32698846
Intron Length:
9104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTCTC
5'SS Class:
major
3'SS Sequence:
GTGCTGTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTCCATATAACA
Flanking Amino Acid:
ANLSLSSQVPDVMVVGEPTL
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
69.5
41.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
71
0.47
1
64
41.6
Minor 5ss
41.7
-0.9
3.1
63.6
40.6
Minor BPS
51
0.03
1.8
66.79
39.3

Associated Gene:

Gene:
LDB2
Ensembl Gene ID:
ENSAPLG00000007630
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027126
32689411 - 33061505
372095