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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32698999_32700129_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32698999 - 32700129
Intron Length:
1131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CATTTTATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGCTTCTCACCA
Flanking Amino Acid:
QKWQRMVAPPAEPTRQPTTK
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
35
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.2
0.75
0.8
77.7
34.9
Minor 5ss
49.9
-0
2.4
66.4
45.1
Minor BPS
50.6
0.02
1.8
63.67
42.8

Associated Gene:

Gene:
LDB2
Ensembl Gene ID:
ENSAPLG00000007630
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027126
32689411 - 33061505
372095
ENSAPLT00000023838
32689411 - 33061505
372095
ENSAPLT00000007945
32682963 - 32905918
222956