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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32700254_32734743_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32700254 - 32734743
Intron Length:
34490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ATTCATTCAATT
Flanking Amino Acid:
LTNFTLNYLRLCVILEPMQE
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
78
38.6
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
91.8
0.94
0.6
84.6
30.3
Minor 5ss
42.5
-0.8
2.9
49.4
46.6
Minor BPS
53.3
0.18
1.7
73.33
37.4

Associated Gene:

Gene:
LDB2
Ensembl Gene ID:
ENSAPLG00000007630
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007945
32682963 - 32905918
222956
ENSAPLT00000027126
32689411 - 33061505
372095
ENSAPLT00000023838
32689411 - 33061505
372095