About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3270558_3270960_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3270558 - 3270960
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGGTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTGTTGGTCATA
Flanking Amino Acid:
MKEADLIERLDD
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.1
37.5
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
70
0.45
1
64.7
41.4
Minor 5ss
23.1
-3.1
3.2
27.7
44.2
Minor BPS
39.4
-0.8
2.7
57.55
43.2

Associated Gene:

Gene:
CDS1
Ensembl Gene ID:
ENSAPLG00000003109
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003172
3270552 - 3290504
19953