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Intron Name: Anas_platyrhynchos_platyrhynchos_4_3271953_3274386_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3271953 - 3274386

Intron Length:

2434

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGCTCG

5'SS Class:

strong_major

3'SS Sequence:

CTTTTTGTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTGCAT

U12 Branch Point Sequence:

ATCTGCATAGCT

Flanking Amino Acid:

YMGSFMLMLLVLSIQVKCFH

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

41.7

Major BPS

62.4

0.31

1.4

73.6

41.8

Major PPT

85.3

0.79

0.8

84.6

30.3

Minor 5ss

44.3

-0.6

2.8

53.9

44.3

Minor BPS

47.5

-0.1

2.2

71.27

45.4

Associated Gene:

Gene:

CDS1

Ensembl Gene ID:

ENSAPLG00000003109

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033126

3264258 - 3290504

26247

ENSAPLT00000003172

3270552 - 3290504

19953