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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32766763_32829541_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32766763 - 32829541
Intron Length:
62779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGAGAT
5'SS Class:
major
3'SS Sequence:
TACTCTATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTTTATTTAATT
Flanking Amino Acid:
FCLEDGPKRYKELPITRNTW
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
69.2
35.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.5
0.57
0.8
70.4
34.5
Minor 5ss
34.3
-1.8
3.6
52.9
44.9
Minor BPS
72.9
0.8
1.4
85.65
34.4

Associated Gene:

Gene:
LDB2
Ensembl Gene ID:
ENSAPLG00000007630
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019050
32766695 - 32905918
139224