About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3277525_3279492_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3277525 - 3279492
Intron Length:
1968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGTGTATT
5'SS Class:
major
3'SS Sequence:
GCATTGTTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACTAACT
Flanking Amino Acid:
KKHYRLQFYMFAWTHVTLLI
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
0.9
81.4
31.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
67.2
0.39
1.1
61.5
43.3
Minor 5ss
42.5
-0.8
2.8
56.3
42.5
Minor BPS
71
0.74
1.9
94.51
32

Associated Gene:

Gene:
CDS1
Ensembl Gene ID:
ENSAPLG00000003109
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033126
3264258 - 3290504
26247
ENSAPLT00000003172
3270552 - 3290504
19953