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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_3279576_3281392_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3279576 - 3281392
Intron Length:
1817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
CATCTTTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ACTTCTGAAACT
Flanking Amino Acid:
VIQNLFEGMIWFLVPISSVI
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
71
34.4
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
77.4
0.62
0.8
69.8
36.3
Minor 5ss
28.7
-2.4
3.5
34
43.2
Minor BPS
49.5
0.04
2.3
73.4
44.1

Associated Gene:

Gene:
CDS1
Ensembl Gene ID:
ENSAPLG00000003109
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033126
3264258 - 3290504
26247
ENSAPLT00000003172
3270552 - 3290504
19953