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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_32829645_32905786_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32829645 - 32905786
Intron Length:
76142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTGCTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAATGAT
U12 Branch Point Sequence:
CTCCTGTTAAGT
Flanking Amino Acid:
MNKRLQSRTEDSDNLWWDAF
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.8
78.8
35.5
Major BPS
59.1
0.23
1.3
51.7
43.9
Major PPT
73.8
0.54
0.9
65.9
40.9
Minor 5ss
35.5
-1.6
2.8
45.4
42.6
Minor BPS
46
-0.2
2.3
63.99
46.6

Associated Gene:

Gene:
LDB2
Ensembl Gene ID:
ENSAPLG00000007630
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027126
32689411 - 33061505
372095
ENSAPLT00000023838
32689411 - 33061505
372095
ENSAPLT00000019050
32766695 - 32905918
139224
ENSAPLT00000007945
32682963 - 32905918
222956