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Intron Name: Anas_platyrhynchos_platyrhynchos_4_3284343_3286794_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3284343 - 3286794

Intron Length:

2452

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGAAAA

5'SS Class:

strong_major

3'SS Sequence:

ATTTTTCACATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATTAT

U12 Branch Point Sequence:

TTATTTTTCACA

Flanking Amino Acid:

PLLLQAVLGWETVNMYPFQM

Intron Amino Acid Position:

308

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.3

0.78

76.9

33.7

Major BPS

84.7

0.86

74.3

40.7

Major PPT

74.3

0.55

0.9

70.4

34.8

Minor 5ss

32.3

-2

2.9

32.2

42.1

Minor BPS

63.3

0.41

1.7

75.26

36.4

Associated Gene:

Gene:

CDS1

Ensembl Gene ID:

ENSAPLG00000003109

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033126

3264258 - 3290504

26247

ENSAPLT00000003172

3270552 - 3290504

19953