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Intron Name: Anas_platyrhynchos_platyrhynchos_4_3286915_3288913_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3286915 - 3288913

Intron Length:

1999

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGCGTCAT

5'SS Class:

strong_major

3'SS Sequence:

TCAAACCCAAAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTAACAT

U12 Branch Point Sequence:

TGTCCTTCAAAC

Flanking Amino Acid:

SGFKRAFKIKDFADTIPGHG

Intron Amino Acid Position:

348

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

74.2

Major BPS

0.52

1.1

77.7

35.3

Major PPT

-0

1.1

46.3

35.1

Minor 5ss

29.4

-2.4

3.1

40.5

45.6

Minor BPS

55.2

0.14

1.6

66.64

38.3

Associated Gene:

Gene:

CDS1

Ensembl Gene ID:

ENSAPLG00000003109

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033126

3264258 - 3290504

26247

ENSAPLT00000003172

3270552 - 3290504

19953