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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33091161_33093220_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33091161 - 33093220
Intron Length:
2060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TATTTTAAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTATTTTAAAA
Flanking Amino Acid:
SSWTSLEFIAETFYDWITGK
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
76.9
33.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.5
0.48
1
67.9
41.2
Minor 5ss
35.1
-1.7
2.8
38.8
40.3
Minor BPS
68.2
0.57
1.4
76.88
33.6

Associated Gene:

Gene:
QDPR
Ensembl Gene ID:
ENSAPLG00000007721
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008025
33090818 - 33099125
8308