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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_33093940_33096261_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33093940 - 33096261
Intron Length:
2322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTAACTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TATACTCTAATT
Flanking Amino Acid:
GAQAALSGTPGMIGYGMAKG
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
36.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
69.8
0.45
1
63.6
42.8
Minor 5ss
37.6
-1.4
3.2
50.9
45.7
Minor BPS
61.2
0.43
1.7
78.76
37.3

Associated Gene:

Gene:
QDPR
Ensembl Gene ID:
ENSAPLG00000007721
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028567
33073425 - 33099125
25701
ENSAPLT00000008025
33090818 - 33099125
8308